PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.8C69J
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 502aa    MW: 55914.7 Da    PI: 6.4552
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.8C69JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.3e-07259280223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C++Cgk F+r  nL+ H+r H
  Aradu.8C69J 259 FCTICGKGFKRDANLRMHMRGH 280
                  6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.17E-5256284No hitNo description
SMARTSM003550.0026258280IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03258285IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-5259305IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
SMARTSM0035553307340IPR015880Zinc finger, C2H2-like
SMARTSM0035539345367IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MDRKESLCTN TWTEPSSLTN WGNGLQTNLS PDPSISDYGE RVEAPFKDFN QPSQMQSLLS  60
KNVIKIADQE NCPPNDSSQT SILQNWDASV MLNNLSFLEK KVHQLQELVC LIVSKKGQTF  120
RQPNELLTQE QQLITADLTS IIVQLISSAG SLLPSARHTL TNTSPLVQQL CQLQGITVPF  180
ASGSGQSSVQ PQNNGADKLS ESSLKNGLPN NCDLEQKYNV EEHELKDEED ADDGENLLPG  240
SYEILQLEKE EILAPHTHFC TICGKGFKRD ANLRMHMRGH GDEYKTAAAL AKPHKESESQ  300
PKLIKRYSCP YAGCKRNKDH KKFQPLKTIL CVKNHYKRTH CDKNYTCSRC HIKKFSVMAD  360
LKTHEKHCGK DKWLCSCGTT FSRKDKLFGH IALFQGHTPA IPMEDNKRTT GLPDQDNSKA  420
EVMSFSSGLN PSTENGVQNV MDVKGNIDDP ITCFSPLNFE ANFGGFNEFT QHQFDDGSEG  480
SFSFLIPGSF KSGEVSSSDN VV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967889.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ9C8N51e-171STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A151QSY80.0A0A151QSY8_CAJCA; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGGLYMA10G35940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53403254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-163C2H2 family protein